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» Alignment of RNA base pairing probability matrices
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NAR
2000
104views more  NAR 2000»
13 years 7 months ago
Transterm: a database of messenger RNA components and signals
Transterm facilitates studies of messenger RNAs and translational control signals. Each messenger RNA (mRNA) from GenBank is extracted and broken into its functional components, i...
Grant H. Jacobs, Peter A. Stockwell, Mark J. Schre...
BMCBI
2006
134views more  BMCBI 2006»
13 years 7 months ago
A statistical score for assessing the quality of multiple sequence alignments
Background: Multiple sequence alignment is the foundation of many important applications in bioinformatics that aim at detecting functionally important regions, predicting protein...
Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa ...
TIT
2011
106views more  TIT 2011»
13 years 2 months ago
Interference Alignment-Based Sum Capacity Bounds for Random Dense Gaussian Interference Networks
We consider a dense K user Gaussian interference network formed by paired transmitters and receivers placed independently at random in a fixed spatial region. Under natural condi...
Oliver Johnson, Matthew Aldridge, Robert J. Piecho...
BIOCOMP
2006
13 years 9 months ago
Evaluation of a Novel Metric for Quality Control in an RNA Interference High Throughput Screening Assay
The application of genome scale RNA interference (RNAi) relies on the development of high quality RNAi high throughput screening (HTS) assays. An important quality control (QC) ch...
Xiaohua Douglas Zhang, Amy S. Espeseth, Namjin Chu...
WABI
2009
Springer
129views Bioinformatics» more  WABI 2009»
14 years 2 months ago
biRNA: Fast RNA-RNA Binding Sites Prediction
We present biRNA, a novel algorithm for prediction of binding sites between two RNAs based on minimization of binding free energy. Similar to RNAup approach [30], we assume the bin...
Hamidreza Chitsaz, Rolf Backofen, Süleyman Ce...