Background: Protein sequence clustering has been widely used as a part of the analysis of protein structure and function. In most cases single linkage or graph-based clustering al...
Yonghui Chen, Kevin D. Reilly, Alan P. Sprague, Zh...
The FSSP database and its new supplement, the Dali Domain Dictionary, present a continuously updated classification of all known 3D protein structures. The classification is deriv...
The automatic detection of applications associated with network traffic is an essential step for network security and traffic engineering. Unfortunately, simple port-based classif...
Graph data represents relationships, connections, or affinities. Innocent relationships produce repeated, and so common, substructures in graph data. We present techniques for dis...
Background: The most common substitution matrices currently used (BLOSUM and PAM) are based on protein sequences with average amino acid distributions, thus they do not represent ...