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» Alignment using Spectral Clusters
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BIB
2007
137views more  BIB 2007»
13 years 10 months ago
Current progress in network research: toward reference networks for key model organisms
The collection of multiple genome-scale datasets is now routine, and the frontier of research in systems biology has shifted accordingly. Rather than clustering a single dataset t...
Balaji S. Srinivasan, Nigam H. Shah, Jason Flannic...
NAR
2007
128views more  NAR 2007»
13 years 9 months ago
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis
Phylogenomic analysis addresses the limitations of function prediction based on annotation transfer, and has been shown to enable the highest accuracy in prediction of protein mol...
Jake Gunn Glanville, Dan Kirshner, Nandini Krishna...
ESCIENCE
2006
IEEE
14 years 3 months ago
Grid Approach to Embarrassingly Parallel CPU-Intensive Bioinformatics Problems
Bioinformatics algorithms such as sequence alignment methods based on profile-HMM (Hidden Markov Model) are popular but CPU-intensive. If large amounts of data are processed, a s...
Heinz Stockinger, Marco Pagni, Lorenzo Cerutti, La...
ITNG
2006
IEEE
14 years 3 months ago
Evaluating Parallel Computing Systems in Bioinformatics
The utilization of parallel processing in bioinformatics is a relatively new development, and wide spread use of parallel processing in this domain has been limited by the availab...
Erik S. Gough, Michael D. Kane
ICASSP
2008
IEEE
14 years 4 months ago
Fast query by example of environmental sounds via robust and efficient cluster-based indexing
There has been much recent progress in the technical infrastructure necessary to continuously characterize and archive all sounds, or more precisely auditory streams, that occur w...
Jiachen Xue, Gordon Wichern, Harvey D. Thornburg, ...