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BIOINFORMATICS
2007
88views more  BIOINFORMATICS 2007»
13 years 7 months ago
Maximum likelihood of phylogenetic networks
Horizontal gene transfer (HGT) is believed to be ubiquitous among bacteria, and plays a major role in their genome diversification as well as their ability to develop resistance t...
Guohua Jin, Luay Nakhleh, Sagi Snir, Tamir Tuller
FOCS
2006
IEEE
14 years 1 months ago
The Kesten-Stigum Reconstruction Bound Is Tight for Roughly Symmetric Binary Channels
We establish the exact threshold for the reconstruction problem for a binary asymmetric channel on the b-ary tree, provided that the asymmetry is sufficiently small. This is the ...
Christian Borgs, Jennifer T. Chayes, Elchanan Moss...
BMCBI
2005
72views more  BMCBI 2005»
13 years 7 months ago
Shortest triplet clustering: reconstructing large phylogenies using representative sets
Background: Understanding the evolutionary relationships among species based on their genetic information is one of the primary objectives in phylogenetic analysis. Reconstructing...
Le Sy Vinh, Arndt von Haeseler
ALMOB
2008
81views more  ALMOB 2008»
13 years 7 months ago
Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family
Background: Sequence-based phylogeny reconstruction is a fundamental task in Bioinformatics. Practically all methods for phylogeny reconstruction are based on multiple alignments....
Holger Wagner, Burkhard Morgenstern, Andreas W. M....
EVOW
2010
Springer
14 years 2 months ago
Top-Down Induction of Phylogenetic Trees
We propose a novel distance based method for phylogenetic tree reconstruction. Our method is based on a conceptual clustering method that extends the well-known decision tree learn...
Celine Vens, Eduardo Costa, Hendrik Blockeel