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» Alignments of RNA Structures
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JCB
2007
108views more  JCB 2007»
13 years 7 months ago
A Dynamic Programming Approach for Finding Common Patterns in RNAs
We developed a dynamic programming approach of computing common sequence structure patterns among two RNAs given their primary sequences and their secondary structures. Common pat...
Sven Siebert, Rolf Backofen
NAR
2000
128views more  NAR 2000»
13 years 7 months ago
The IMB Jena Image Library of Biological Macromolecules
The IMB Jena Image Library of Biological Macromolecules (http://www.imb-jena.de/IMAGE.html ) is aimed at a better dissemination of information on three-dimensional biopolymer stru...
Jan Reichert, Andreas Jabs, Peter Slickers, Jü...
ICDM
2006
IEEE
164views Data Mining» more  ICDM 2006»
14 years 2 months ago
Unsupervised Learning of Tree Alignment Models for Information Extraction
We propose an algorithm for extracting fields from HTML search results. The output of the algorithm is a database table– a data structure that better lends itself to high-level...
Philip Zigoris, Damian Eads, Yi Zhang
NAR
2007
136views more  NAR 2007»
13 years 7 months ago
DBAli tools: mining the protein structure space
The DBAli tools use a comprehensive set of structural alignments in the DBAli database to leverage the structural information deposited in the Protein Data Bank (PDB). These tools...
Marc A. Martí-Renom, Ursula Pieper, Mallur ...
BMCBI
2006
102views more  BMCBI 2006»
13 years 8 months ago
Taking U out, with two nucleases?
Background: REX1 and REX2 are protein components of the RNA editing complex (the editosome) and function as exouridylylases. The exact roles of REX1 and REX2 in the editosome are ...
I. Saira Mian, Elizabeth A. Worthey, Reza Salavati