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» Alignments of RNA Structures
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JCB
2002
111views more  JCB 2002»
13 years 7 months ago
A General Edit Distance between RNA Structures
Arc-annotated sequences are useful in representing the structural information of RNA sequences. In general, RNA secondary and tertiary structures can be represented as a set of ne...
Tao Jiang, Guohui Lin, Bin Ma, Kaizhong Zhang
ISMB
1997
13 years 9 months ago
Standardized Representations of the Literature: Combining Diverse Sources of Ribosomal Data
We are building a knowledge base (KB) of published structural data on the 30s ribosomal subunit in prokaryotes. Our KB is distinguished by a standardized representation of biologi...
Russ B. Altman, Neil F. Abernethy, Richard O. Chen
BIOCOMP
2006
13 years 9 months ago
The Use of Context-Sensitive Grammar For Modeling RNA Pseudoknots
- In this study, a context-sensitive grammar is suggested to model various forms of RNA secondary structures, especially pseudoknots. Comparing with a conventional context-free gra...
Keum-Young Sung
AVI
2006
13 years 9 months ago
NAVRNA: visualization - exploration - editing of RNA
In this paper we describe NAVRNA, an interactive system that enables biologists or researchers in bioinformatics to visualize, explore and edit RNA molecules. The key characterist...
Gilles Bailly, Laurence Nigay, David Auber
HPDC
2010
IEEE
13 years 8 months ago
Exploring the RNA folding energy landscape using scalable distributed cyberinfrastructure
The increasing significance of RNAs in transcriptional or post-transcriptional gene regulation processes has generated considerable interest towards the prediction of RNA folding ...
Joohyun Kim, Wei Huang, Sharath Maddineni, Fareed ...