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» Alignments of RNA Structures
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SPE
2008
91views more  SPE 2008»
13 years 7 months ago
A multiple layer model to compare RNA secondary structures
composed of various graphs linked together by relations of abstraction/refinement. The new structure is useful for representing information that can be described at t levels of abs...
Julien Allali, Marie-France Sagot
IPPS
2009
IEEE
14 years 2 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
WABI
2004
Springer
14 years 1 months ago
Novel Tree Edit Operations for RNA Secondary Structure Comparison
We describe an algorithm for comparing two RNA secondary structures coded in the form of trees that introduces two novel operations, called node fusion and edge fusion, besides the...
Julien Allali, Marie-France Sagot
CORR
2008
Springer
120views Education» more  CORR 2008»
13 years 7 months ago
A new distance for high level RNA secondary structure comparison
We describe an algorithm for comparing two RNA secondary structures coded in the form of trees that introduces two new operations, called node fusion and edge fusion, besides the t...
Julien Allali, Marie-France Sagot
BMCBI
2004
116views more  BMCBI 2004»
13 years 7 months ago
Evaluation of the suitability of free-energy minimization using nearest-neighbor energy parameters for RNA secondary structure p
Background: A detailed understanding of an RNA's correct secondary and tertiary structure is crucial to understanding its function and mechanism in the cell. Free energy mini...
Kishore J. Doshi, Jamie J. Cannone, Christian W. C...