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» Alignments of RNA Structures
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NAACL
2010
13 years 7 months ago
Unsupervised Syntactic Alignment with Inversion Transduction Grammars
Syntactic machine translation systems currently use word alignments to infer syntactic correspondences between the source and target languages. Instead, we propose an unsupervised...
Adam Pauls, Dan Klein, David Chiang, Kevin Knight
EMNLP
2009
13 years 6 months ago
Weighted Alignment Matrices for Statistical Machine Translation
Current statistical machine translation systems usually extract rules from bilingual corpora annotated with 1-best alignments. They are prone to learn noisy rules due to alignment...
Yang Liu, Tian Xia, Xinyan Xiao, Qun Liu
DNA
2009
Springer
185views Bioinformatics» more  DNA 2009»
14 years 3 months ago
NP-Completeness of the Direct Energy Barrier Problem without Pseudoknots
Knowledge of energy barriers between pairs of secondary structures for a given DNA or RNA molecule is useful, both in understanding RNA function in biological settings and in desig...
Ján Manuch, Chris Thachuk, Ladislav Stacho,...
BMCBI
2004
158views more  BMCBI 2004»
13 years 8 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
BMCBI
2010
118views more  BMCBI 2010»
13 years 9 months ago
From learning taxonomies to phylogenetic learning: Integration of 16S rRNA gene data into FAME-based bacterial classification
Background: Machine learning techniques have shown to improve bacterial species classification based on fatty acid methyl ester (FAME) data. Nonetheless, FAME analysis has a limit...
Bram Slabbinck, Willem Waegeman, Peter Dawyndt, Pa...