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» Alignments of RNA Structures
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CVIU
2008
120views more  CVIU 2008»
13 years 8 months ago
Trajectory fusion for three-dimensional volume reconstruction
We address the 3D volume reconstruction problem from depth adjacent sub-volumes acquired by a confocal laser scanning microscope (CLSM). Our goal is to align the sub-volumes by es...
Sang-Chul Lee, Peter Bajcsy
BMCBI
2008
87views more  BMCBI 2008»
13 years 8 months ago
Protein structure search and local structure characterization
Background: Structural similarities among proteins can provide valuable insight into their functional mechanisms and relationships. As the number of available three-dimensional (3...
Shih-Yen Ku, Yuh-Jyh Hu
SSDBM
2006
IEEE
163views Database» more  SSDBM 2006»
14 years 2 months ago
ACache: Using Caching to Improve the Performance of Multiple Sequence Alignments
Multiple sequence alignment represents a class of powerful bioinformatics tools with many uses in computational biology ranging from discovery of characteristic motifs and conserv...
Xun Tu, Kajal T. Claypool, Cindy X. Chen
BMCBI
2010
122views more  BMCBI 2010»
13 years 8 months ago
Fast and accurate protein substructure searching with simulated annealing and GPUs
Background: Searching a database of protein structures for matches to a query structure, or occurrences of a structural motif, is an important task in structural biology and bioin...
Alex Stivala, Peter J. Stuckey, Anthony Wirth
ICPR
2008
IEEE
14 years 9 months ago
A matrix alignment approach for link prediction
This paper introduces a new discriminative learning technique for link prediction based on the matrix alignment approach. Our algorithm automatically determines the most predictiv...
Jerry Scripps, Pang-Ning Tan, Feilong Chen, Abdol-...