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ISMB
2004
13 years 10 months ago
Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data
Motivation: Sigma factors regulate the expression of genes in Bacillus subtilis at the transcriptional level. First we assess the ability of currently available gene regulatory ne...
Michiel J. L. de Hoon, Yuko Makita, Seiya Imoto, K...
AOSD
2007
ACM
14 years 26 days ago
Using natural language program analysis to locate and understand action-oriented concerns
Most current software systems contain undocumented high-level ideas implemented across multiple files and modules. When developers perform program maintenance tasks, they often wa...
David Shepherd, Zachary P. Fry, Emily Hill, Lori L...
ECIR
2010
Springer
13 years 9 months ago
Analyzing Information Retrieval Methods to Recover Broken Web Links
In this work we compare different techniques to automatically find candidate web pages to substitute broken links. We extract information from the anchor text, the content of the p...
Juan Martinez-Romo, Lourdes Araujo
CCS
2011
ACM
12 years 8 months ago
SURF: detecting and measuring search poisoning
Search engine optimization (SEO) techniques are often abused to promote websites among search results. This is a practice known as blackhat SEO. In this paper we tackle a newly em...
Long Lu, Roberto Perdisci, Wenke Lee
IMSCCS
2006
IEEE
14 years 2 months ago
Combining Comparative Genomics with de novo Motif Discovery to Identify Human Transcription Factor DNA-Binding Motifs
Background: As more and more genomes are sequenced, comparative genomics approaches provide a methodology for identifying conserved regulatory elements that may be involved in gen...
Linyong Mao, W. Jim Zheng