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TC
2010
13 years 5 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
BMCBI
2006
129views more  BMCBI 2006»
13 years 7 months ago
Improved alignment quality by combining evolutionary information, predicted secondary structure and self-organizing maps
Background: Protein sequence alignment is one of the basic tools in bioinformatics. Correct alignments are required for a range of tasks including the derivation of phylogenetic t...
Tomas Ohlson, Varun Aggarwal, Arne Elofsson, Rober...
IR
2010
13 years 4 months ago
Sentence-level event classification in unstructured texts
The ability to correctly classify sentences that describe events is an important task for many natural language applications such as Question Answering (QA) and Text Summarisation....
Martina Naughton, Nicola Stokes, Joe Carthy
BMCBI
2010
183views more  BMCBI 2010»
13 years 7 months ago
SING: Subgraph search In Non-homogeneous Graphs
Background: Finding the subgraphs of a graph database that are isomorphic to a given query graph has practical applications in several fields, from cheminformatics to image unders...
Raffaele Di Natale, Alfredo Ferro, Rosalba Giugno,...
IJFCS
2006
110views more  IJFCS 2006»
13 years 7 months ago
Sat-based Model Checking for Region Automata
For successful software verification, model checkers must be capable of handling a large number of program variables. Traditional, BDD-based model checking is deficient in this re...
Fang Yu, Bow-Yaw Wang