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CBMS
2006
IEEE
14 years 2 months ago
MS2DB: An Algorithmic Approach to Determine Disulfide Linkage Patterns
Determining the number and location of disulfide bonds within a protein provide valuable insight into the protein’s three-dimensional structure. Purely computational methods tha...
Timothy Lee, Rahul Singh, Ten-Yang Yen, Bruce Mach...
DASFAA
2007
IEEE
174views Database» more  DASFAA 2007»
14 years 3 months ago
Efficient Holistic Twig Joins in Leaf-to-Root Combining with Root-to-Leaf Way
Finding all the occurrences of a twig pattern on multiple elements in an XML document is a core operation for efficient evaluation of XML queries. Holistic twig join algorithms, Tw...
Guoliang Li, Jianhua Feng, Yong Zhang, Lizhu Zhou
ICDM
2006
IEEE
227views Data Mining» more  ICDM 2006»
14 years 2 months ago
Incremental Mining of Sequential Patterns over a Stream Sliding Window
Incremental mining of sequential patterns from data streams is one of the most challenging problems in mining data streams. However, previous work of mining sequential patterns fr...
Chin-Chuan Ho, Hua-Fu Li, Fang-Fei Kuo, Suh-Yin Le...
CBMS
2007
IEEE
14 years 3 months ago
MS2DB: A Mass-Based Hashing Algorithm for the Identification of Disulfide Linkage Patterns in Protein Utilizing Mass Spectrometr
The tertiary structure and biological function of a protein can be better understood given knowledge of the number and location of its disulfide bonds. By utilizing mass spectrome...
Timothy Lee, Rahul Singh, Ten-Yang Yen, Bruce Mach...
SIAMCOMP
2008
121views more  SIAMCOMP 2008»
13 years 8 months ago
Closest Substring Problems with Small Distances
We study two pattern matching problems that are motivated by applications in computational biology. In the Closest Substring problem k strings s1, . . ., sk are given, and the tas...
Dániel Marx