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BMCBI
2010
113views more  BMCBI 2010»
13 years 7 months ago
Efficient protein alignment algorithm for protein search
Background: Proteins show a great variety of 3D conformations, which can be used to infer their evolutionary relationship and to classify them into more general groups; therefore ...
Zaixin Lu, Zhiyu Zhao, Bin Fu
TC
2010
13 years 6 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
SOSP
1997
ACM
13 years 9 months ago
Frangipani: A Scalable Distributed File System
The idealdistributed file system wouldprovide all its userswith coherent,shared access tothe samesetoffiles,yetwould be arbitrarily scalable to provide more storage space and hi...
Chandramohan A. Thekkath, Timothy Mann, Edward K. ...
CCGRID
2003
IEEE
14 years 26 days ago
Recovering Internet Symmetry in Distributed Computing
This paper describes two systems to recover the Internet connectivity impaired by private networks and firewalls. These devices cause asymmetry in the Internet, making peer-to-pee...
Se-Chang Son, Miron Livny
CCGRID
2010
IEEE
13 years 8 months ago
A Map-Reduce System with an Alternate API for Multi-core Environments
Map-reduce framework has received a significant attention and is being used for programming both large-scale clusters and multi-core systems. While the high productivity aspect of ...
Wei Jiang, Vignesh T. Ravi, Gagan Agrawal