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» An Efficient Method for Multiple Sequence Alignment
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BMCBI
2006
113views more  BMCBI 2006»
13 years 8 months ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida
BMCBI
2008
131views more  BMCBI 2008»
13 years 8 months ago
CoCoNUT: an efficient system for the comparison and analysis of genomes
Background: Comparative genomics is the analysis and comparison of genomes from different species. This area of research is driven by the large number of sequenced genomes and hea...
Mohamed Ibrahim Abouelhoda, Stefan Kurtz, Enno Ohl...
ISBI
2007
IEEE
14 years 2 months ago
Multiview Registration of Cardiac Tagging Mri Images
This paper introduces a new method based on k-Nearest Neighbors Graphs (KNNG) for bringing into alignment multiple views of the same scene acquired at two different time points. T...
Estanislao Oubel, Mathieu De Craene, Mattia Gazzol...
BMCBI
2008
138views more  BMCBI 2008»
13 years 8 months ago
Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote ho
Background: Nonnegative matrix factorization (NMF) is a feature extraction method that has the property of intuitive part-based representation of the original features. This uniqu...
Inkyung Jung, Jaehyung Lee, Soo-Young Lee, Dongsup...
BMCBI
2010
94views more  BMCBI 2010»
13 years 8 months ago
A high-throughput pipeline for the design of real-time PCR signatures
Background: Pathogen diagnostic assays based on polymerase chain reaction (PCR) technology provide high sensitivity and specificity. However, the design of these diagnostic assays...
Ravi Vijaya Satya, Kamal Kumar, Nela Zavaljevski, ...