In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Computing large multiple protein sequence alignments using progressive alignment tools such as ClustalW requires several hours on state-of-the-art workstations. ClustalW uses a th...
Computers with multiple processor cores using shared memory are now ubiquitous. In this paper, we present several parallel geometric algorithms that specifically target this envi...
Vicente H. F. Batista, David L. Millman, Sylvain P...
Abstract— We examine the problem of parallelizing the inferencing process for OWL knowledge-bases. A key challenge in this problem is partitioning the computational workload of t...
The problem of statically assigning nonpartitioned files in a parallel I/O system has been extensively investigated. A basic workload characteristic assumption of existing solutio...