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WABI
2009
Springer
132views Bioinformatics» more  WABI 2009»
14 years 2 months ago
mpscan: Fast Localisation of Multiple Reads in Genomes
Abstract. With Next Generation Sequencers, sequence based transcriptomic or epigenomic assays yield millions of short sequence reads that need to be mapped back on a reference geno...
Eric Rivals, Leena Salmela, Petteri Kiiskinen, Pet...
CGO
2008
IEEE
14 years 2 months ago
Latency-tolerant software pipelining in a production compiler
In this paper we investigate the benefit of scheduling non-critical loads for a higher latency during software pipelining. "Noncritical" denotes those loads that have s...
Sebastian Winkel, Rakesh Krishnaiyer, Robyn Sampso...
TC
2010
13 years 6 months ago
Network-on-Chip Hardware Accelerators for Biological Sequence Alignment
—The most pervasive compute operation carried out in almost all bioinformatics applications is pairwise sequence homology detection (or sequence alignment). Due to exponentially ...
Souradip Sarkar, Gaurav Ramesh Kulkarni, Partha Pr...
BMCBI
2011
13 years 2 months ago
PileLine: a toolbox to handle genome position information in next-generation sequencing studies
Background: Genomic position (GP) files currently used in next-generation sequencing (NGS) studies are always difficult to manipulate due to their huge size and the lack of approp...
Daniel Glez-Peña, Gonzalo Gómez-L&oa...
MOBICOM
2004
ACM
14 years 1 months ago
Exploiting medium access diversity in rate adaptive wireless LANs
Recent years have seen the growing popularity of multi-rate wireless network devices (e.g., 802.11a cards) that can exploit variations in channel conditions and improve overall ne...
Zhengrong Ji, Yi Yang, Junlan Zhou, Mineo Takai, R...