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BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
14 years 3 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
ICCD
1994
IEEE
85views Hardware» more  ICCD 1994»
14 years 1 months ago
A Superassociative Tagged Cache Coherence Directory
Dynamically tagged directories are memory-efficient mechanisms for maintaining cache coherence in sharedmemory multiprocessors. These directories use specialpurpose caches of poin...
David J. Lilja, Shanthi Ambalavanan
SC
2009
ACM
14 years 3 months ago
Automating the generation of composed linear algebra kernels
Memory bandwidth limits the performance of important kernels in many scientific applications. Such applications often use sequences of Basic Linear Algebra Subprograms (BLAS), an...
Geoffrey Belter, Elizabeth R. Jessup, Ian Karlin, ...
ICS
2000
Tsinghua U.
14 years 21 days ago
Push vs. pull: data movement for linked data structures
As the performance gap between the CPU and main memory continues to grow, techniques to hide memory latency are essential to deliver a high performance computer system. Prefetchin...
Chia-Lin Yang, Alvin R. Lebeck
ECOOP
1999
Springer
14 years 1 months ago
Synthesizing Objects
This paper argues that the current OO technology does not support reuse and configurability in an effective way. This problem can be addressed by augmenting OO analysis and design ...
Krzysztof Czarnecki, Ulrich W. Eisenecker