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BMCBI
2006
108views more  BMCBI 2006»
13 years 8 months ago
RibAlign: a software tool and database for eubacterial phylogeny based on concatenated ribosomal protein subunits
Background: Until today, analysis of 16S ribosomal RNA (rRNA) sequences has been the de-facto gold standard for the assessment of phylogenetic relationships among prokaryotes. How...
Hanno Teeling, Frank Oliver Glöckner
SIGMOD
2004
ACM
100views Database» more  SIGMOD 2004»
14 years 9 months ago
Cost-Based Labeling of Groups of Mass Spectra
We make two main contributions in this paper. First, we motivate and introduce a novel class of data mining problems that arise in labeling a group of mass spectra, specifically f...
Lei Chen 0003, Zheng Huang, Raghu Ramakrishnan
BMCBI
2008
136views more  BMCBI 2008»
13 years 9 months ago
LOMA: A fast method to generate efficient tagged-random primers despite amplification bias of random PCR on pathogens
Background: Pathogen detection using DNA microarrays has the potential to become a fast and comprehensive diagnostics tool. However, since pathogen detection chips currently utili...
Wah-Heng Lee, Christopher W. Wong, Wan Yee Leong, ...
VLDB
1998
ACM
95views Database» more  VLDB 1998»
14 years 29 days ago
RainForest - A Framework for Fast Decision Tree Construction of Large Datasets
Classification of large datasets is an important data mining problem. Many classification algorithms have been proposed in the literature, but studies have shown that so far no al...
Johannes Gehrke, Raghu Ramakrishnan, Venkatesh Gan...
BMCBI
2008
145views more  BMCBI 2008»
13 years 8 months ago
The contrasting properties of conservation and correlated phylogeny in protein functional residue prediction
Background: Amino acids responsible for structure, core function or specificity may be inferred from multiple protein sequence alignments where a limited set of residue types are ...
Jonathan R. Manning, Emily R. Jefferson, Geoffrey ...