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» An Information-Theoretic Definition of Similarity
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BMCBI
2008
200views more  BMCBI 2008»
13 years 8 months ago
Defining functional distances over Gene Ontology
Background: A fundamental problem when trying to define the functional relationships between proteins is the difficulty in quantifying functional similarities, even when well-stru...
Angela del Pozo, Florencio Pazos, Alfonso Valencia
BMCBI
2007
97views more  BMCBI 2007»
13 years 8 months ago
A verification protocol for the probe sequences of Affymetrix genome arrays reveals high probe accuracy for studies in mouse, hu
Background: The Affymetrix GeneChip technology uses multiple probes per gene to measure its expression level. Individual probe signals can vary widely, which hampers proper interp...
Rudi Alberts, Peter Terpstra, Menno Hardonk, Leoni...
WWW
2007
ACM
14 years 9 months ago
Semi-automated adaptation of service interactions
In today's Web, many functionality-wise similar Web services are offered through heterogeneous interfaces (operation definitions) and business protocols (ordering constraints...
Hamid R. Motahari Nezhad, Boualem Benatallah, Axel...
STOC
2009
ACM
106views Algorithms» more  STOC 2009»
14 years 9 months ago
An axiomatic approach to algebrization
Non-relativization of complexity issues can be interpreted as giving some evidence that these issues cannot be resolved by "black-box" techniques. In the early 1990'...
Russell Impagliazzo, Valentine Kabanets, Antonina ...
RECOMB
2004
Springer
14 years 9 months ago
The Statistical Significance of Max-Gap Clusters
Identifying gene clusters, genomic regions that share local similarities in gene organization, is a prerequisite for many different types of genomic analyses, including operon pred...
Rose Hoberman, David Sankoff, Dannie Durand