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BMCBI
2008
115views more  BMCBI 2008»
15 years 4 months ago
BioGraphE: high-performance bionetwork analysis using the Biological Graph Environment
Background: Graphs and networks are common analysis representations for biological systems. Many traditional graph algorithms such as k-clique, k-coloring, and subgraph matching h...
George Chin Jr., Daniel G. Chavarría-Mirand...
BMCBI
2006
179views more  BMCBI 2006»
15 years 4 months ago
Multiscale Hy3S: Hybrid stochastic simulation for supercomputers
Background: Stochastic simulation has become a useful tool to both study natural biological systems and design new synthetic ones. By capturing the intrinsic molecular fluctuation...
Howard Salis, Vassilios Sotiropoulos, Yiannis N. K...
FGCS
2006
111views more  FGCS 2006»
15 years 4 months ago
Collaborative data visualization for Earth Sciences with the OptIPuter
Collaborative visualization of large-scale datasets across geographically distributed sites is becoming increasingly important for Earth Sciences. Not only does it enhance our und...
Nut Taesombut, Xinran (Ryan) Wu, Andrew A. Chien, ...
BMCBI
2004
228views more  BMCBI 2004»
15 years 4 months ago
An XML standard for the dissemination of annotated 2D gel electrophoresis data complemented with mass spectrometry results
Background: Many proteomics initiatives require a seamless bioinformatics integration of a range of analytical steps between sample collection and systems modeling immediately ass...
Romesh Stanislaus, Liu Hong Jiang, Martha Swartz, ...
TPDS
2002
198views more  TPDS 2002»
15 years 3 months ago
Orthogonal Striping and Mirroring in Distributed RAID for I/O-Centric Cluster Computing
This paper presents a new distributed disk-array architecture for achieving high I/O performance in scalable cluster computing. In a serverless cluster of computers, all distribute...
Kai Hwang, Hai Jin, Roy S. C. Ho