Abstract—Protein structure prediction is the problem of finding the functional conformation of a protein given only its amino uence. The HP lattice model is an abstract formulat...
Mario Garza-Fabre, Eduardo Rodriguez-Tello, Gregor...
This paper introduces the concept of a critical backbone as a minimal set of variables or part of the solution necessary to be within the basin of attraction of the global optimum...
Correlated motif mining (CMM) is the problem to find overrepresented pairs of patterns, called motif pairs, in interacting protein sequences. Algorithmic solutions for CMM thereb...
Peter Boyen, Frank Neven, Dries Van Dyck, Aalt-Jan...
We consider the problem of finding a ranking of a set of elements that is "closest to" a given set of input rankings of the elements; more precisely, we want to find a p...
Abstract. We revisit Gaussian Adaptation (GaA), a black-box optimizer for discrete and continuous problems that has been developed in the late 1960’s. This largely neglected sear...