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CEC
2011
IEEE
12 years 7 months ago
Comparing alternative energy functions for the HP model of protein structure prediction
Abstract—Protein structure prediction is the problem of finding the functional conformation of a protein given only its amino uence. The HP lattice model is an abstract formulat...
Mario Garza-Fabre, Eduardo Rodriguez-Tello, Gregor...
GECCO
2007
Springer
154views Optimization» more  GECCO 2007»
14 years 1 months ago
Finding critical backbone structures with genetic algorithms
This paper introduces the concept of a critical backbone as a minimal set of variables or part of the solution necessary to be within the basin of attraction of the global optimum...
Adam Prügel-Bennett
ICDM
2009
IEEE
152views Data Mining» more  ICDM 2009»
14 years 2 months ago
SLIDER: Mining Correlated Motifs in Protein-Protein Interaction Networks
Correlated motif mining (CMM) is the problem to find overrepresented pairs of patterns, called motif pairs, in interacting protein sequences. Algorithmic solutions for CMM thereb...
Peter Boyen, Frank Neven, Dries Van Dyck, Aalt-Jan...
ALENEX
2009
172views Algorithms» more  ALENEX 2009»
13 years 5 months ago
Rank Aggregation: Together We're Strong
We consider the problem of finding a ranking of a set of elements that is "closest to" a given set of input rankings of the elements; more precisely, we want to find a p...
Frans Schalekamp, Anke van Zuylen
EVOW
2010
Springer
14 years 2 months ago
Gaussian Adaptation Revisited - An Entropic View on Covariance Matrix Adaptation
Abstract. We revisit Gaussian Adaptation (GaA), a black-box optimizer for discrete and continuous problems that has been developed in the late 1960’s. This largely neglected sear...
Christian L. Müller, Ivo F. Sbalzarini