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» An analysis framework for search sequences
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JCB
1998
92views more  JCB 1998»
13 years 7 months ago
Homology Detection via Family Pairwise Search
The function of an unknown biological sequence can often be accurately inferred by identifying sequences homologous to the original sequence. Given a query set of known homologs, ...
William Noble Grundy
IJBRA
2006
92views more  IJBRA 2006»
13 years 7 months ago
Jumpstarting phylogenetic analysis
: Phylogenetic analysis is a central tool in studies of comparative genomics. When a new region of DNA is isolated and sequenced, researchers are often forced to throw away months ...
Jesse Mecham, Mark J. Clement, Quinn Snell, Todd F...
BMCBI
2005
147views more  BMCBI 2005»
13 years 7 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen
INTERSPEECH
2010
13 years 2 months ago
Direct observation of pruning errors (DOPE): a search analysis tool
The search for the optimal word sequence can be performed efficiently even in a speech recognizer with a very large vocabulary and complex models. This is achieved using pruning m...
Volker Steinbiss, Martin Sundermeyer, Hermann Ney
SPIRE
2005
Springer
14 years 1 months ago
Experimental Analysis of a Fast Intersection Algorithm for Sorted Sequences
Abstract. This work presents an experimental comparison of intersection algorithms for sorted sequences, including the recent algorithm of Baeza-Yates. This algorithm performs on a...
Ricardo A. Baeza-Yates, Alejandro Salinger