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    BMCBI
    2008
    135views more  BMCBI 2008»
    Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data
    13 years 8 months ago
    Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data
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    Background: Normalization is essential in dual-labelled microarray data analysis to remove nonbiological variations and systematic biases. Many normalization methods have been use...
    Huiling Xiong, Dapeng Zhang, Christopher J. Martyn...
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    BMCBI
    2008
    124views more  BMCBI 2008»
    A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays
    13 years 8 months ago
    A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays
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    Background: Microarray pre-processing usually consists of normalization and summarization. Normalization aims to remove non-biological variations across different arrays. The norm...
    Huanying Ge, Chao Cheng, Lei M. Li
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    BMCBI
    2008
    114views more  BMCBI 2008»
    Partial mixture model for tight clustering of gene expression time-course
    13 years 8 months ago
    Partial mixture model for tight clustering of gene expression time-course
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    Background: Tight clustering arose recently from a desire to obtain tighter and potentially more informative clusters in gene expression studies. Scattered genes with relatively l...
    Yinyin Yuan, Chang-Tsun Li, Roland Wilson
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    BMCBI
    2008
    138views more  BMCBI 2008»
    Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
    13 years 8 months ago
    Automated simultaneous analysis phylogenetics (ASAP): an enabling tool for phlyogenomics
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    Background: The availability of sequences from whole genomes to reconstruct the tree of life has the potential to enable the development of phylogenomic hypotheses in ways that ha...
    Indra Neil Sarkar, Mary G. Egan, Gloria M. Coruzzi...
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    BMCBI
    2008
    142views more  BMCBI 2008»
    Optimal neighborhood indexing for protein similarity search
    13 years 8 months ago
    Optimal neighborhood indexing for protein similarity search
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    Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
    Pierre Peterlongo, Laurent Noé, Dominique L...
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