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» An integrative approach to modeling biological networks
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RECOMB
2008
Springer
14 years 8 months ago
Integrating Sequence and Topology for Efficient and Accurate Detection of Horizontal Gene Transfer
Abstract. One phylogeny-based approach to horizontal gene transfer (HGT) detection entails comparing the topology of a gene tree to that of the species tree, and using their differ...
Cuong Than, Guohua Jin, Luay Nakhleh
ECCV
2006
Springer
13 years 11 months ago
A Rao-Blackwellized Parts-Constellation Tracker
We present a method for efficiently tracking objects represented as constellations of parts by integrating out the shape of the model. Parts-based models have been successfully ap...
Grant Schindler, Frank Dellaert
ANOR
2006
133views more  ANOR 2006»
13 years 7 months ago
An integrated model for logistics network design
In this paper we introduce a new formulation of the logistics network design problem encountered in deterministic, single-country, single-period contexts. Our formulation is flexi...
Jean-François Cordeau, Federico Pasin, Mari...
BIBE
2008
IEEE
111views Bioinformatics» more  BIBE 2008»
13 years 9 months ago
Structure learning for biomolecular pathways containing cycles
Bayesian network structure learning is a useful tool for elucidation of regulatory structures of biomolecular pathways. The approach however is limited by its acyclicity constraint...
S. Itani, Karen Sachs, Garry P. Nolan, M. A. Dahle...
BMCBI
2008
166views more  BMCBI 2008»
13 years 7 months ago
Biclustering via optimal re-ordering of data matrices in systems biology: rigorous methods and comparative studies
Background: The analysis of large-scale data sets via clustering techniques is utilized in a number of applications. Biclustering in particular has emerged as an important problem...
Peter A. DiMaggio Jr., Scott R. McAllister, Christ...