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» An ontology for bioinformatics applications
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CSB
2005
IEEE
103views Bioinformatics» more  CSB 2005»
14 years 2 months ago
ECOME: A simple model for an evolving consumption web
ECOME is an interactive, graph-based model for simulating an evolving, closed consumption web. It demonstrates the fundamental behavior of a global ecosystem over evolutionary tim...
Christopher Bystroff, Sam DeLuca, Carl N. McDaniel
CSB
2005
IEEE
143views Bioinformatics» more  CSB 2005»
14 years 2 months ago
Multivariate gene selection: Does it help
When building predictors of disease state based on gene expression data, gene selection is performed in order to achieve a good performance and to identify a relevant subset of ge...
Carmen Lai, Marcel J. T. Reinders
WABI
2004
Springer
106views Bioinformatics» more  WABI 2004»
14 years 2 months ago
Suboptimal Local Alignments Across Multiple Scoring Schemes
Abstract. Sequence alignment algorithms have a long standing tradition in bioinformatics. In this paper, we formulate an extension to existing local alignment algorithms: local ali...
Morris Michael, Christoph Dieterich, Jens Stoye
BIBE
2003
IEEE
116views Bioinformatics» more  BIBE 2003»
14 years 2 months ago
An Assessment of a Metric Space Database Index to Support Sequence Homology
Hierarchical metric-space clustering methods have been commonly used to organize proteomes into taxonomies. Consequently, it is often anticipated that hierarchical clustering can ...
Rui Mao, Weijia Xu, Neha Singh, Daniel P. Miranker
BIBE
2003
IEEE
14 years 2 months ago
Requirements of Phylogenetic Databases
We examine the organizational impact on phylogenetic databases of the increasing sophistication in the need and use of phylogenetic data. A primary issue is the use of the unnorma...
Luay Nakhleh, Daniel P. Miranker, François ...