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» An ontology for bioinformatics applications
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WABI
2005
Springer
14 years 2 months ago
Improved Maintenance of Molecular Surfaces Using Dynamic Graph Connectivity
We present recent developments in efficiently maintaining the boundary and surface area of protein molecules as they undergo conformational changes. As the method that we devised k...
Eran Eyal, Dan Halperin
DNA
2004
Springer
157views Bioinformatics» more  DNA 2004»
14 years 2 months ago
Bond-Free Languages: Formalizations, Maximality and Construction Methods
The problem of negative design of DNA languages is addressed, that is, properties and construction methods of large sets of words that prevent undesired bonds when used in DNA com...
Lila Kari, Stavros Konstantinidis, Petr Sosí...
WABI
2004
Springer
107views Bioinformatics» more  WABI 2004»
14 years 2 months ago
Phylogenetic Super-networks from Partial Trees
—In practice, one is often faced with incomplete phylogenetic data, such as a collection of partial trees or partial splits. This paper poses the problem of inferring a phylogene...
Daniel H. Huson, Tobias Dezulian, Tobias H. Kl&oum...
CSB
2003
IEEE
153views Bioinformatics» more  CSB 2003»
14 years 2 months ago
Combining Microarrays and Biological Knowledge for Estimating Gene Networks via Bayesian Networks
We propose a statistical method for estimating a gene network based on Bayesian networks from microarray gene expression data together with biological knowledge including protein-...
Seiya Imoto, Tomoyuki Higuchi, Takao Goto, Kousuke...
PPPJ
2003
ACM
14 years 2 months ago
Multi-tiered distributed computing platform
A simple programmable Java platform-independent distributed computation system has been developed to exploit the free resources on computers linked together by a network. It is a ...
Andrew J. Page, Thomas M. Keane, Richard Allen, Th...