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» An ontology for bioinformatics applications
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WAIM
2010
Springer
13 years 7 months ago
HyperGraphDB: A Generalized Graph Database
We present HyperGraphDB, a novel graph database based on generalized hypergraphs where hyperedges can contain other hyperedges. This generalization automatically reifies every ent...
Borislav Iordanov
GCB
2010
Springer
198views Biometrics» more  GCB 2010»
13 years 7 months ago
RNALfoldz: Efficient Prediction of Thermodynamically Stable, Local Secondary Structures
Abstract: The search for local RNA secondary structures and the annotation of unusually stable folding regions in genomic sequences are two well motivated bioinformatic problems. I...
Andreas R. Gruber, Stephan H. F. Bernhart, You Zho...
WEA
2010
Springer
205views Algorithms» more  WEA 2010»
13 years 7 months ago
Practical Compressed Suffix Trees
Abstract. The suffix tree is an extremely important data structure for stringology, with a wealth of applications in bioinformatics. Classical implementations require much space, w...
Rodrigo Cánovas, Gonzalo Navarro
CORR
2011
Springer
208views Education» more  CORR 2011»
13 years 4 months ago
GRASP and path-relinking for Coalition Structure Generation
In Artificial Intelligence with Coalition Structure Generation (CSG) one refers to those cooperative complex problems that require to find an optimal partition, maximising a soci...
Nicola Di Mauro, Teresa Maria Altomare Basile, Ste...
ESWS
2007
Springer
14 years 3 months ago
Real-World Reasoning with OWL
Abstract. This work is motivated by experiences in the course of developing an ontology-based application within a real-world setting. We found out that current benchmarks are not ...
Timo Weithöner, Thorsten Liebig, Marko Luther...