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» An ontology for bioinformatics applications
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KDD
2002
ACM
144views Data Mining» more  KDD 2002»
14 years 9 months ago
Efficiently mining frequent trees in a forest
Mining frequent trees is very useful in domains like bioinformatics, web mining, mining semi-structured data, and so on. We formulate the problem of mining (embedded) subtrees in ...
Mohammed Javeed Zaki
SIGMOD
2005
ACM
144views Database» more  SIGMOD 2005»
14 years 9 months ago
Mining Periodic Patterns with Gap Requirement from Sequences
We study a problem of mining frequently occurring periodic patterns with a gap requirement from sequences. Given a character sequence S of length L and a pattern P of length l, we...
Minghua Zhang, Ben Kao, David Wai-Lok Cheung, Kevi...
CISIS
2010
IEEE
14 years 4 months ago
Scalability Analysis of Progressive Alignment on a Multicore
—Sequence alignment is a fundamental instrument in Bioinformatics. In recent years, numerous proposals have been addressing the problem of accelerating this class of applications...
Sebastian Isaza, Friman Sánchez, Georgi Gay...
APSCC
2009
IEEE
14 years 3 months ago
SADI Semantic Web Services -- 'cause you can't always GET what you want!
SADI – Semantic Automated Discovery and Integration – is a set of standards-compliant Semantic Web Service design patterns that exploit the relatively straightforward interfac...
Mark D. Wilkinson, Benjamin P. Vandervalk, E. Luke...
SC
2009
ACM
14 years 3 months ago
Highly scalable genome assembly on campus grids
Bioinformatics researchers need efficient means to process large collections of sequence data. One application of interest, genome assembly, has great potential for parallelizati...
Christopher Moretti, Michael Olson, Scott J. Emric...