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IPPS
2003
IEEE
14 years 2 months ago
Optimizing Synchronization Operations for Remote Memory Communication Systems
Synchronization operations, such as fence and locking, are used in many parallel operations accessing shared memory. However, a process which is blocked waiting for a fence operat...
Darius Buntinas, Amina Saify, Dhabaleswar K. Panda...
CLUSTER
2006
IEEE
14 years 2 months ago
Designing High Performance and Scalable MPI Intra-node Communication Support for Clusters
As new processor and memory architectures advance, clusters start to be built from larger SMP systems, which makes MPI intra-node communication a critical issue in high performanc...
Lei Chai, Albert Hartono, Dhabaleswar K. Panda
INFOCOM
2007
IEEE
14 years 3 months ago
On the Extreme Parallelism Inside Next-Generation Network Processors
Next-generation high-end Network Processors (NP) must address demands from both diversified applications and ever-increasing traffic pressure. One major challenge is to design an e...
Lei Shi, Yue Zhang 0006, Jianming Yu, Bo Xu, Bin L...
BMCBI
2010
189views more  BMCBI 2010»
13 years 8 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
ICS
2004
Tsinghua U.
14 years 2 months ago
Adaptive incremental checkpointing for massively parallel systems
Given the scale of massively parallel systems, occurrence of faults is no longer an exception but a regular event. Periodic checkpointing is becoming increasingly important in the...
Saurabh Agarwal, Rahul Garg, Meeta Sharma Gupta, J...