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» Analysis of Proteomic Pattern Data for Cancer Detection
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RECOMB
2002
Springer
14 years 8 months ago
Discovering local structure in gene expression data: the order-preserving submatrix problem
This paper concerns the discovery of patterns in gene expression matrices, in which each element gives the expression level of a given gene in a given experiment. Most existing me...
Amir Ben-Dor, Benny Chor, Richard M. Karp, Zohar Y...
BMCBI
2006
143views more  BMCBI 2006»
13 years 7 months ago
IsoSVM - Distinguishing isoforms and paralogs on the protein level
Background: Recent progress in cDNA and EST sequencing is yielding a deluge of sequence data. Like database search results and proteome databases, this data gives rise to inferred...
Michael Spitzer, Stefan Lorkowski, Paul Cullen, Al...
CSB
2005
IEEE
151views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Analysis of SNP-Expression Association Matrices
High throughput expression profiling and genotyping technologies provide the means to study the genetic determinants of population variation in gene expression variation. In this ...
Anya Tsalenko, Roded Sharan, Hege Edvardsen, Vesse...
CORR
2010
Springer
186views Education» more  CORR 2010»
13 years 7 months ago
Significant Interval and Frequent Pattern Discovery in Web Log Data
There is a considerable body of work on sequence mining of Web Log Data We are using One Pass frequent Episode discovery (or FED) algorithm, takes a different approach than the tr...
Kanak Saxena, Rahul Shukla
BMCBI
2011
13 years 2 months ago
Statistical Test of Expression Pattern (STEPath): a new strategy to integrate gene expression data with genomic information in i
Background: In the last decades, microarray technology has spread, leading to a dramatic increase of publicly available datasets. The first statistical tools developed were focuse...
Paolo G. V. Martini, Davide Risso, Gabriele Sales,...