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IEEESCC
2009
IEEE
13 years 5 months ago
Theoretical Framework for Eliminating Redundancy in Workflows
In this paper we look at combining and compressing a set of workflows, such that computation can be minimized. In this context, we look at two novel theoretical problems with appl...
Dhrubajyoti Saha, Abhishek Samanta, Smruti R. Sara...
BMCBI
2006
100views more  BMCBI 2006»
13 years 7 months ago
Towards a better solution to the shortest common supersequence problem: the deposition and reduction algorithm
Background: The problem of finding a Shortest Common Supersequence (SCS) of a set of sequences is an important problem with applications in many areas. It is a key problem in biol...
Kang Ning, Hon Wai Leong
IWPEC
2004
Springer
14 years 21 days ago
A Structural View on Parameterizing Problems: Distance from Triviality
Based on a series of known and new examples, we propose the generalized setting of “distance from triviality” measurement as a reasonable and prospective way of determining use...
Jiong Guo, Falk Hüffner, Rolf Niedermeier
FCT
2005
Springer
14 years 26 days ago
Fully Incremental LCS Computation
Sequence comparison is a fundamental task in pattern matching. Its applications include file comparison, spelling correction, information retrieval, and computing (dis)similaritie...
Yusuke Ishida, Shunsuke Inenaga, Ayumi Shinohara, ...
IFIP
2004
Springer
14 years 21 days ago
Efficient Algorithms for Handling Molecular Weighted Sequences
Abstract In this paper we introduce the Weighted Suffix Tree, an efficient data structure for computing string regularities in weighted sequences of molecular data. Molecular Wei...
Costas S. Iliopoulos, Christos Makris, Yannis Pana...