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» Analyzing time series gene expression data
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TCS
2008
13 years 7 months ago
On temporal logic constraint solving for analyzing numerical data time series
Temporal logics and model-checking have proved successful to respectively express biological properties of complex biochemical systems, and automatically verify their satisfaction...
François Fages, Aurélien Rizk
BIBE
2004
IEEE
160views Bioinformatics» more  BIBE 2004»
13 years 11 months ago
A Time Series Analysis of Microarray Data
As the capture and analysis of single-time-point microarray expression data becomes routine, investigators are turning to time-series expression data to investigate complex gene r...
Selnur Erdal, Ozgur Ozturk, David L. Armbruster, H...
BMCBI
2005
178views more  BMCBI 2005»
13 years 7 months ago
A quantization method based on threshold optimization for microarray short time series
Background: Reconstructing regulatory networks from gene expression profiles is a challenging problem of functional genomics. In microarray studies the number of samples is often ...
Barbara Di Camillo, Fatima Sanchez-Cabo, Gianna To...
DMIN
2006
120views Data Mining» more  DMIN 2006»
13 years 9 months ago
Time Series as a Point - A Novel Approach for Time Series Cluster Visualization
: Temporal data mining is concerned with the analysis of temporal data and finding temporal patterns, regularities, trends, clusters in sets of temporal data. Wavelet transform pro...
R. Pradeep Kumar, P. Nagabhushan
BMCBI
2008
259views more  BMCBI 2008»
13 years 7 months ago
DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcripti
Background: A typical step in the analysis of gene expression data is the determination of clusters of genes that exhibit similar expression patterns. Researchers are confronted w...
Evert-Jan Blom, Sacha A. F. T. van Hijum, Klaas J....