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BMCBI
2011
12 years 11 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
STOC
2010
ACM
170views Algorithms» more  STOC 2010»
13 years 12 months ago
Connectivity oracles for failure prone graphs
Dynamic graph connectivity algorithms have been studied for many years, but typically in the most general possible setting, where the graph can evolve in completely arbitrary ways...
Ran Duan, Seth Pettie
ICALP
2004
Springer
14 years 1 months ago
The Black-Box Complexity of Nearest Neighbor Search
We define a natural notion of efficiency for approximate nearest-neighbor (ANN) search in general n-point metric spaces, namely the existence of a randomized algorithm which answ...
Robert Krauthgamer, James R. Lee
AI
2010
Springer
13 years 7 months ago
Understanding the scalability of Bayesian network inference using clique tree growth curves
Bayesian networks (BNs) are used to represent and ef ciently compute with multi-variate probability distributions in a wide range of disciplines. One of the main approaches to per...
Ole J. Mengshoel
ICDT
2012
ACM
251views Database» more  ICDT 2012»
11 years 10 months ago
Computing universal models under guarded TGDs
A universal model of a database D and a set Σ of integrity constraints is a database that extends D, satisfies Σ, and is most general in the sense that it contains sound and co...
André Hernich