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BMCBI
2010
117views more  BMCBI 2010»
13 years 8 months ago
New decoding algorithms for Hidden Markov Models using distance measures on labellings
Background: Existing hidden Markov model decoding algorithms do not focus on approximately identifying the sequence feature boundaries. Results: We give a set of algorithms to com...
Daniel G. Brown 0001, Jakub Truszkowski
RECOMB
2003
Springer
14 years 8 months ago
Modeling dependencies in protein-DNA binding sites
The availability of whole genome sequences and high-throughput genomic assays opens the door for in silico analysis of transcription regulation. This includes methods for discover...
Yoseph Barash, Gal Elidan, Nir Friedman, Tommy Kap...
IUI
2009
ACM
14 years 4 months ago
Detecting and correcting user activity switches: algorithms and interfaces
The TaskTracer system allows knowledge workers to define a set of activities that characterize their desktop work. It then associates with each user-defined activity the set of ...
Jianqiang Shen, Jed Irvine, Xinlong Bao, Michael G...
GECCO
2007
Springer
163views Optimization» more  GECCO 2007»
14 years 2 months ago
Action-selection and crossover strategies for self-modeling machines
In previous work [7] a computational framework was demonstrated that employs evolutionary algorithms to automatically model a given system. This is accomplished by alternating the...
Josh C. Bongard
GECCO
2007
Springer
165views Optimization» more  GECCO 2007»
14 years 2 months ago
Peptide detectability following ESI mass spectrometry: prediction using genetic programming
The accurate quantification of proteins is important in several areas of cell biology, biotechnology and medicine. Both relative and absolute quantification of proteins is often d...
David C. Wedge, Simon J. Gaskell, Simon J. Hubbard...