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LATIN
2004
Springer
14 years 29 days ago
Combinatorial Problems on Strings with Applications to Protein Folding
We consider the problem of protein folding in the HP model on the 3D square lattice. This problem is combinatorially equivalent to folding a string of 0’s and 1’s so that the s...
Alantha Newman, Matthias Ruhl
CIAC
2010
Springer
194views Algorithms» more  CIAC 2010»
14 years 13 days ago
An Algorithmic Framework for Motif Discovery Problems in Weighted Sequences
A weighted sequence is a string in which a set of characters may appear at each position with respective probabilities of occurrence. A common task is to locate a given motif in a ...
Hui Zhang, Qing Guo, Costas S. Iliopoulos
SPIRE
2001
Springer
14 years 20 hour ago
Exact Distribution of Deletion Sizes for Unavoidable Strings
We constructively prove the exact distribution of deletion sizes for unavoidable strings, under the reductive decidability method of Zimin and Bean et al. Bounds such as these on ...
Christine E. Heitsch
ICDAR
2009
IEEE
13 years 5 months ago
Bayesian Similarity Model Estimation for Approximate Recognized Text Search
Approximate text search is a basic technique to handle recognized text that contains recognition errors. This paper proposes an approximate string search for recognized text using...
Atsuhiro Takasu
CPM
2000
Springer
160views Combinatorics» more  CPM 2000»
13 years 12 months ago
Approximation Algorithms for Hamming Clustering Problems
We study Hamming versions of two classical clustering problems. The Hamming radius p-clustering problem (HRC) for a set S of k binary strings, each of length n, is to find p bina...
Leszek Gasieniec, Jesper Jansson, Andrzej Lingas