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ICPP
2003
IEEE
14 years 23 days ago
FastLSA: A Fast, Linear-Space, Parallel and Sequential Algorithm for Sequence Alignment
Pairwise sequence alignment is a fundamental operation for homology search in bioinformatics. For two DNA or protein sequences of length ¢ and £ , full-matrix (FM), dynamic prog...
Adrian Driga, Paul Lu, Jonathan Schaeffer, Duane S...
ESA
2003
Springer
111views Algorithms» more  ESA 2003»
14 years 21 days ago
Fast Smallest-Enclosing-Ball Computation in High Dimensions
Abstract. We develop a simple combinatorial algorithm for computing the smallest enclosing ball of a set of points in high dimensional Euclidean space. The resulting code is in mos...
Kaspar Fischer, Bernd Gärtner, Martin Kutz
SDM
2007
SIAM
109views Data Mining» more  SDM 2007»
13 years 9 months ago
Segmentations with Rearrangements
Sequence segmentation is a central problem in the analysis of sequential and time-series data. In this paper we introduce and we study a novel variation to the segmentation proble...
Aristides Gionis, Evimaria Terzi
JMLR
2010
149views more  JMLR 2010»
13 years 2 months ago
Learning Bayesian Network Structure using LP Relaxations
We propose to solve the combinatorial problem of finding the highest scoring Bayesian network structure from data. This structure learning problem can be viewed as an inference pr...
Tommi Jaakkola, David Sontag, Amir Globerson, Mari...
INFOCOM
2011
IEEE
12 years 11 months ago
Delay constrained minimum energy broadcast in cooperative wireless networks
—We formulate the problem of delay constrained energy-efficient broadcast in cooperative multihop wireless networks. We show that this important problem is not only NPcomplete, ...
Marjan A. Baghaie, Bhaskar Krishnamachari