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    RECOMB
    2002
    Springer
    123views Computational Biology» more  RECOMB 2002»
    Approximate matching of secondary structures
    14 years 11 months ago
    Approximate matching of secondary structures
    Download  algo.inria.fr
    This talk presents an algorithm to search for all approximate matches of a helix in a genome, where a helix is a combination of sequence and folding constraints. It is a joint wor...
    Nadia El-Mabrouk, Mathieu Raffinot
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    JCO
    2007
    149views more  JCO 2007»
    A 2-approximation for the preceding-and-crossing structured 2-interval pattern problem
    13 years 11 months ago
    A 2-approximation for the preceding-and-crossing structured 2-interval pattern problem
    Download  digital.cs.usu.edu
    The 2-interval pattern problem over its various models and restrictions was proposed by Vialette (2004) for the application of RNA secondary structure prediction. We present an O(n...
    Minghui Jiang
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    BIOINFORMATICS
    2004
    77views more  BIOINFORMATICS 2004»
    An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
    13 years 11 months ago
    An Iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots
    Download  www.cs.wustl.edu
    Jianhua Ruan, Gary D. Stormo, Weixiong Zhang
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    AAIM
    2007
    Springer
    145views Algorithms» more  AAIM 2007»
    Improved Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
    14 years 5 months ago
    Improved Approximation Algorithms for Predicting RNA Secondary Structures with Arbitrary Pseudoknots
    Download  digital.cs.usu.edu
    We study three closely related problems motivated by the prediction of RNA secondary structures with arbitrary pseudoknots: the MAXIMUM BASE PAIR STACKINGS problem proposed by Ieon...
    Minghui Jiang
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    IEICET
    2007
    61views more  IEICET 2007»
    Approximation Algorithms for Optimal RNA Secondary Structures Common to Multiple Sequences
    13 years 11 months ago
    Approximation Algorithms for Optimal RNA Secondary Structures Common to Multiple Sequences
    Download  www.ipsj.or.jp
    Takeyuki Tamura, Tatsuya Akutsu
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