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» Approximate matching of secondary structures
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DASFAA
2003
IEEE
151views Database» more  DASFAA 2003»
14 years 2 months ago
Approximate String Matching in DNA Sequences
Approximate string matching on large DNA sequences data is very important in bioinformatics. Some studies have shown that suffix tree is an efficient data structure for approxim...
Lok-Lam Cheng, David Wai-Lok Cheung, Siu-Ming Yiu
FOCS
2008
IEEE
14 years 3 months ago
A Geometric Approach to Lower Bounds for Approximate Near-Neighbor Search and Partial Match
This work investigates a geometric approach to proving cell probe lower bounds for data structure problems. We consider the approximate nearest neighbor search problem on the Bool...
Rina Panigrahy, Kunal Talwar, Udi Wieder
BMCBI
2011
13 years 20 days ago
Structator: fast index-based search for RNA sequence-structure patterns
Background: The secondary structure of RNA molecules is intimately related to their function and often more conserved than the sequence. Hence, the important task of searching dat...
Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebas...
CSCLP
2007
Springer
14 years 3 months ago
Combining Two Structured Domains for Modeling Various Graph Matching Problems
Abstract. Graph pattern matching is a central application in many fields. In various areas, the structure of the pattern can only be approximated and exact matching is then too ac...
Yves Deville, Grégoire Dooms, Stépha...
ICDE
2008
IEEE
157views Database» more  ICDE 2008»
14 years 10 months ago
TALE: A Tool for Approximate Large Graph Matching
Abstract-- Large graph datasets are common in many emerging database applications, and most notably in large-scale scientific applications. To fully exploit the wealth of informati...
Yuanyuan Tian, Jignesh M. Patel