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ICCS
2001
Springer
14 years 28 days ago
High-Performance Algorithm Engineering for Computational Phylogenetics
Abstract. Phylogeny reconstruction from molecular data poses complex optimization problems: almost all optimization models are NP-hard and thus computationally intractable. Yet app...
Bernard M. E. Moret, David A. Bader, Tandy Warnow
EVOW
2010
Springer
13 years 7 months ago
Finding Gapped Motifs by a Novel Evolutionary Algorithm
Background: Identifying approximately repeated patterns, or motifs, in DNA sequences from a set of co-regulated genes is an important step towards deciphering the complex gene reg...
Chengwei Lei, Jianhua Ruan
CGF
2008
192views more  CGF 2008»
13 years 8 months ago
Non-Rigid Registration Under Isometric Deformations
We present a robust and efficient algorithm for the pairwise non-rigid registration of partially overlapping 3D surfaces. Our approach treats non-rigid registration as an optimiza...
Qi-Xing Huang, Bart Adams, Martin Wicke, Leonidas ...
SODA
2010
ACM
216views Algorithms» more  SODA 2010»
14 years 5 months ago
On linear and semidefinite programming relaxations for hypergraph matching
The hypergraph matching problem is to find a largest collection of disjoint hyperedges in a hypergraph. This is a well-studied problem in combinatorial optimization and graph theo...
Yuk Hei Chan, Lap Chi Lau
STOC
2012
ACM
221views Algorithms» more  STOC 2012»
11 years 11 months ago
From query complexity to computational complexity
We consider submodular optimization problems, and provide a general way of translating oracle inapproximability results arising from the symmetry gap technique to computational co...
Shahar Dobzinski, Jan Vondrák