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BMCBI
2008
164views more  BMCBI 2008»
13 years 10 months ago
Word correlation matrices for protein sequence analysis and remote homology detection
Background: Classification of protein sequences is a central problem in computational biology. Currently, among computational methods discriminative kernel-based approaches provid...
Thomas Lingner, Peter Meinicke
SIGMOD
2001
ACM
184views Database» more  SIGMOD 2001»
14 years 10 months ago
Locally Adaptive Dimensionality Reduction for Indexing Large Time Series Databases
Similarity search in large time series databases has attracted much research interest recently. It is a difficult problem because of the typically high dimensionality of the data....
Eamonn J. Keogh, Kaushik Chakrabarti, Sharad Mehro...
NAR
2006
84views more  NAR 2006»
13 years 9 months ago
PHEPS: web-based pH-dependent Protein Electrostatics Server
PHEPS (pH-dependent Protein Electrostatics Server) is a web service for fast prediction and experiment planning support, as well as for correlation and analysis of experimentally ...
Alexander A. Kantardjiev, Boris P. Atanasov
BMCBI
2010
139views more  BMCBI 2010»
13 years 10 months ago
A global optimization algorithm for protein surface alignment
Background: A relevant problem in drug design is the comparison and recognition of protein binding sites. Binding sites recognition is generally based on geometry often combined w...
Paola Bertolazzi, Concettina Guerra, Giampaolo Liu...
WABI
2007
Springer
14 years 3 months ago
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking
Christopher James Langmead⋆ and Sumit Kumar Jha Department of Computer Science, Carnegie Mellon University We present a novel approach for predicting protein folding kinetics us...
Christopher James Langmead, Sumit Kumar Jha