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ICAPR
2009
Springer
14 years 1 months ago
Hierarchical Local Maps for Robust Approximate Nearest Neighbor Computation
In this paper, we propose a novel method for fast nearest neighbors retrieval in non-Euclidean and non-metric spaces. We organize the data into a hierarchical fashion that preserv...
Pratyush Bhatt, Anoop M. Namboodiri
BMCBI
2008
158views more  BMCBI 2008»
13 years 6 months ago
Metrics for GO based protein semantic similarity: a systematic evaluation
Background: Several semantic similarity measures have been applied to gene products annotated with Gene Ontology terms, providing a basis for their functional comparison. However,...
Catia Pesquita, Daniel Faria, Hugo P. Bastos, Ant&...
BMCBI
2006
96views more  BMCBI 2006»
13 years 6 months ago
Structure alignment based on coding of local geometric measures
Background: A structure alignment method based on a local geometric property is presented and its performance is tested in pairwise and multiple structure alignments. In this appr...
Peter L. Chang, Andrew W. Rinne, T. Gregory Dewey
BMCBI
2005
119views more  BMCBI 2005»
13 years 6 months ago
The distance-profile representation and its application to detection of distantly related protein families
Background: Detecting homology between remotely related protein families is an important problem in computational biology since the biological properties of uncharacterized protei...
Chin-Jen Ku, Golan Yona
BMCBI
2010
177views more  BMCBI 2010»
13 years 6 months ago
Clustering of protein families into functional subtypes using Relative Complexity Measure with reduced amino acid alphabets
Background: Phylogenetic analysis can be used to divide a protein family into subfamilies in the absence of experimental information. Most phylogenetic analysis methods utilize mu...
Aydin Albayrak, Hasan H. Otu, Ugur O. Sezerman