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BMCBI
2010
189views more  BMCBI 2010»
13 years 8 months ago
High quality protein sequence alignment by combining structural profile prediction and profile alignment using SABERTOOTH
Background: Protein alignments are an essential tool for many bioinformatics analyses. While sequence alignments are accurate for proteins of high sequence similarity, they become...
Florian Teichert, Jonas Minning, Ugo Bastolla, Mar...
INCDM
2007
Springer
97views Data Mining» more  INCDM 2007»
14 years 2 months ago
Clustering by Random Projections
Abstract. Clustering algorithms for multidimensional numerical data must overcome special difficulties due to the irregularities of data distribution. We present a clustering algo...
Thierry Urruty, Chabane Djeraba, Dan A. Simovici
DASC
2006
IEEE
14 years 2 months ago
Assessing Vulnerabilities in Apache and IIS HTTP Servers
We examine the feasibility of quantitatively characterizing the vulnerabilities in the two major HTTP servers. In particular, we investigate the applicability of quantitative empi...
Sung-Whan Woo, Omar H. Alhazmi, Yashwant K. Malaiy...
BMCBI
2008
142views more  BMCBI 2008»
13 years 8 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
BMCBI
2008
142views more  BMCBI 2008»
13 years 8 months ago
Microarray data mining: A novel optimization-based approach to uncover biologically coherent structures
Background: DNA microarray technology allows for the measurement of genome-wide expression patterns. Within the resultant mass of data lies the problem of analyzing and presenting...
Meng Piao Tan, Erin N. Smith, James R. Broach, Chr...