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BMCBI
2008
108views more  BMCBI 2008»
13 years 7 months ago
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance
Background: Motif finding algorithms have developed in their ability to use computationally efficient methods to detect patterns in biological sequences. However the posterior cla...
Ana C. Casimiro, Susana Vinga, Ana T. Freitas, Arl...
BMCBI
2004
104views more  BMCBI 2004»
13 years 7 months ago
Discriminative topological features reveal biological network mechanisms
Background: Recent genomic and bioinformatic advances have motivated the development of numerous network models intending to describe graphs of biological, technological, and soci...
Manuel Middendorf, Etay Ziv, Carter Adams, Jen Hom...
BMCBI
2006
114views more  BMCBI 2006»
13 years 7 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
IUI
2005
ACM
14 years 1 months ago
Intelligent data entry assistant for XML using ensemble learning
XML has emerged as the primary standard of data representation and data exchange [13]. Although many software tools exist to assist the XML implementation process, data must be ma...
Danico Lee, Costas Tsatsoulis
ICML
2005
IEEE
14 years 8 months ago
Supervised dimensionality reduction using mixture models
Given a classification problem, our goal is to find a low-dimensional linear transformation of the feature vectors which retains information needed to predict the class labels. We...
Sajama, Alon Orlitsky