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NAR
2006
83views more  NAR 2006»
13 years 8 months ago
KOBAS server: a web-based platform for automated annotation and pathway identification
There is an increasing need to automatically annotate a set of genes or proteins (from genome sequencing, DNA microarray analysis or protein 2D gel experiments) using controlled v...
Jianmin Wu, Xizeng Mao, Tao Cai, Jingchu Luo, Lipi...
BMCBI
2008
86views more  BMCBI 2008»
13 years 8 months ago
Predicting protein linkages in bacteria: Which method is best depends on task
Background: Applications of computational methods for predicting protein functional linkages are increasing. In recent years, several bacteria-specific methods for predicting link...
Anis Karimpour-Fard, Sonia M. Leach, Ryan T. Gill,...
BMCBI
2010
153views more  BMCBI 2010»
13 years 8 months ago
Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data
Background: Chromatin immunoprecipitation combined with DNA microarrays (ChIP-chip) is an assay used for investigating DNA-protein-binding or post-translational chromatin/histone ...
Benedikt Zacher, Pei Fen Kuan, Achim Tresch
LREC
2008
138views Education» more  LREC 2008»
13 years 10 months ago
Pragmatic Annotation of Discourse Markers in a Multilingual Parallel Corpus (Arabic- Spanish-English)
Discourse structure and coherence relations are one of the main inferential challenges addressed by computational pragmatics. The present study focuses on discourse markers as key...
Doaa Samy, Ana González-Ledesma
BMCBI
2006
165views more  BMCBI 2006»
13 years 8 months ago
Improving the quality of protein structure models by selecting from alignment alternatives
Background: In the area of protein structure prediction, recently a lot of effort has gone into the development of Model Quality Assessment Programs (MQAPs). MQAPs distinguish hig...
Ingolf Sommer, Stefano Toppo, Oliver Sander, Thoma...