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IPPS
2003
IEEE
14 years 2 months ago
Mesh Partitioning: A Multilevel Ant-Colony-Optimization Algorithm
Mesh partitioning is an important problem that has extensive applications in many areas. Multilevel algorithms are a successful class of optimization techniques which addresses th...
Peter Korosec, Jurij Silc, Borut Robic
RIVF
2008
13 years 10 months ago
Speeding up subset seed algorithm for intensive protein sequence comparison
Abstract--Sequence similarity search is a common and repeated task in molecular biology. The rapid growth of genomic databases leads to the need of speeding up the treatment of thi...
Van Hoa Nguyen, Dominique Lavenier
ISHPC
2000
Springer
14 years 18 days ago
Fast Isosurface Generation Using the Cell-Edge Centered Propagation Algorithm
Isosurface generation algorithms usually need a vertex-identification process since most of polygon-vertices of an isosurface are shared by several polygons. In our observation the...
Takayuki Itoh, Yasushi Yamaguchi, Koji Koyamada
IPPS
2008
IEEE
14 years 3 months ago
Ordered index seed algorithm for intensive DNA sequence comparison
This paper presents a seed-based algorithm for intensive DNA sequence comparison. The novelty comes from the way seeds are used to efficiently generate small ungapped alignments ...
Dominique Lavenier
HIPC
2007
Springer
14 years 3 months ago
Accelerating Large Graph Algorithms on the GPU Using CUDA
Abstract. Large graphs involving millions of vertices are common in many practical applications and are challenging to process. Practical-time implementations using high-end comput...
Pawan Harish, P. J. Narayanan