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IPPS
2005
IEEE
14 years 2 months ago
Evaluation of Rate-Based Adaptivity in Asynchronous Data Stream Joins
Continuous query systems are an intuitive way for users to access streaming data in large-scale scientific applications containing many hundreds of streams. A challenge in these ...
Beth Plale, Nithya N. Vijayakumar
BMCBI
2004
150views more  BMCBI 2004»
13 years 8 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
PPSN
2004
Springer
14 years 2 months ago
Learning Probabilistic Tree Grammars for Genetic Programming
Genetic Programming (GP) provides evolutionary methods for problems with tree representations. A recent development in Genetic Algorithms (GAs) has led to principled algorithms cal...
Peter A. N. Bosman, Edwin D. de Jong
BCB
2010
156views Bioinformatics» more  BCB 2010»
13 years 3 months ago
Accelerating HMMER on GPUs by implementing hybrid data and task parallelism
Many biologically motivated problems are expressed as dynamic programming recurrences and are difficult to parallelize due to the intrinsic data dependencies in their algorithms. ...
Narayan Ganesan, Roger D. Chamberlain, Jeremy Buhl...
PPSN
2004
Springer
14 years 2 months ago
A Hybrid GRASP - Evolutionary Algorithm Approach to Golomb Ruler Search
We consider the problem of finding small Golomb rulers, a hard combinatorial optimization task. This problem is here tackled by means of a hybrid evolutionary algorithm (EA). This...
Carlos Cotta, Antonio J. Fernández