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» Augmenting Suffix Trees, with Applications
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ICDE
2010
IEEE
750views Database» more  ICDE 2010»
13 years 12 months ago
Efficient and accurate discovery of patterns in sequence datasets
Existing sequence mining algorithms mostly focus on mining for subsequences. However, a large class of applications, such as biological DNA and protein motif mining, require effici...
Avrilia Floratou, Sandeep Tata, Jignesh M. Patel
RECOMB
2005
Springer
14 years 7 months ago
Information Theoretic Approaches to Whole Genome Phylogenies
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
David Burstein, Igor Ulitsky, Tamir Tuller, Benny ...
JCB
2006
124views more  JCB 2006»
13 years 7 months ago
The Average Common Substring Approach to Phylogenomic Reconstruction
We describe a novel method for efficient reconstruction of phylogenetic trees, based on sequences of whole genomes or proteomes, whose lengths may greatly vary. The core of our me...
Igor Ulitsky, David Burstein, Tamir Tuller, Benny ...
FOCS
2004
IEEE
13 years 11 months ago
On the Streaming Model Augmented with a Sorting Primitive
The need to deal with massive data sets in many practical applications has led to a growing interest in computational models appropriate for large inputs. The most important quali...
Gagan Aggarwal, Mayur Datar, Sridhar Rajagopalan, ...
VLDB
2007
ACM
89views Database» more  VLDB 2007»
14 years 7 months ago
Effective Phrase Prediction
Autocompletion is a widely deployed facility in systems that require user input. Having the system complete a partially typed "word" can save user time and effort. In th...
Arnab Nandi, H. V. Jagadish