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» Automated genome sequence analysis and annotation
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IJCIS
2002
255views more  IJCIS 2002»
13 years 7 months ago
BioMAS: A Multi-Agent System for Genomic Annotation
The explosive growth in genomic (and soon, expression and proteomic) data, exemplified by the Human Genome Project, is a fertile domain for the application of multi-agent informat...
Keith Decker, Salim Khan, Carl Schmidt, Gang Situ,...
BMCBI
2005
173views more  BMCBI 2005»
13 years 7 months ago
Phydbac "Gene Function Predictor" : a gene annotation tool based on genomic context analysis
Background: The large amount of completely sequenced genomes allows genomic context analysis to predict reliable functional associations between prokaryotic proteins. Major method...
François Enault, Karsten Suhre, Jean-Michel...
BMCBI
2008
84views more  BMCBI 2008»
13 years 7 months ago
The comparative analysis of statistics, based on the likelihood ratio criterion, in the automated annotation problem
Background: This paper discusses the problem of automated annotation. It is a continuation of the previous work on the A4-algorithm (Adaptive algorithm of automated annotation) de...
Andrey M. Leontovich, Konstantin Y. Tokmachev, Han...
BMCBI
2008
132views more  BMCBI 2008»
13 years 7 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
BMCBI
2005
198views more  BMCBI 2005»
13 years 7 months ago
Clustering protein sequences with a novel metric transformed from sequence similarity scores and sequence alignments with neural
Background: The sequencing of the human genome has enabled us to access a comprehensive list of genes (both experimental and predicted) for further analysis. While a majority of t...
Qicheng Ma, Gung-Wei Chirn, Richard Cai, Joseph D....