In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Abstract. In this paper we investigate automated methods for externalizing internal memory data structures. We consider a class of balanced trees that we call weight-balanced parti...
Pankaj K. Agarwal, Lars Arge, Octavian Procopiuc, ...
— In DHT based P2P systems, various issues such as peer heterogeneity, network topology, and diverse file popularity, may affect the DHT system efficiency. In this paper, we pr...
This paper aims to describe the implementation of TAKAKAW, an efficient parallel application for the simulation of molecular dynamics designed to handle large proteins in biology....
We have taken a NIST molecular dynamics simulation program (md3), which was configured as a single sequential process running on a CRAY C90 vector supercomputer, and parallelized ...