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IPPS
2009
IEEE
14 years 2 months ago
Dynamic parallelization for RNA structure comparison
In this paper we describe the parallelization of a dynamic programming algorithm used to find common RNA secondary structures including pseudoknots and similar structures. The se...
Eric Snow, Eric Aubanel, Patricia Evans
ICALP
2001
Springer
13 years 12 months ago
A Framework for Index Bulk Loading and Dynamization
Abstract. In this paper we investigate automated methods for externalizing internal memory data structures. We consider a class of balanced trees that we call weight-balanced parti...
Pankaj K. Agarwal, Lars Arge, Octavian Procopiuc, ...
CCGRID
2006
IEEE
14 years 1 months ago
Effective Load Balancing in P2P Systems
— In DHT based P2P systems, various issues such as peer heterogeneity, network topology, and diverse file popularity, may affect the DHT system efficiency. In this paper, we pr...
Zhiyong Xu, Laxmi N. Bhuyan
IPPS
1999
IEEE
13 years 11 months ago
Large Scale Simulation of Parallel Molecular Dynamics
This paper aims to describe the implementation of TAKAKAW, an efficient parallel application for the simulation of molecular dynamics designed to handle large proteins in biology....
Pierre-Eric Bernard, Thierry Gautier, Denis Trystr...
WSC
1998
13 years 8 months ago
Parallel Implementation of a Molecular Dynamics Simulation Program
We have taken a NIST molecular dynamics simulation program (md3), which was configured as a single sequential process running on a CRAY C90 vector supercomputer, and parallelized ...
Alan Mink, Christophe Bailly