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BMCBI
2005
125views more  BMCBI 2005»
13 years 7 months ago
A simple approach for protein name identification: prospects and limits
Background: Significant parts of biological knowledge are available only as unstructured text in articles of biomedical journals. By automatically identifying gene and gene produc...
Katrin Fundel, Daniel Güttler, Ralf Zimmer, J...
BMCBI
2005
155views more  BMCBI 2005»
13 years 7 months ago
Mining protein function from text using term-based support vector machines
Background: Text mining has spurred huge interest in the domain of biology. The goal of the BioCreAtIvE exercise was to evaluate the performance of current text mining systems. We...
Simon B. Rice, Goran Nenadic, Benjamin J. Stapley
BMCBI
2006
140views more  BMCBI 2006»
13 years 7 months ago
MACSIMS : multiple alignment of complete sequences information management system
Background: In the post-genomic era, systems-level studies are being performed that seek to explain complex biological systems by integrating diverse resources from fields such as...
Julie D. Thompson, Arnaud Muller, Andrew M. Waterh...
SEMWEB
2009
Springer
14 years 1 months ago
Using AgreementMaker to align Ontologies for OAEI 2009: Overview, Results, and Outlook
Abstract. This paper describes our participation in the Ontology Alignment Evaluation Initiative (OAEI) 2009 with the AgreementMaker system for ontology matching, in which we obtai...
Isabel F. Cruz, Flavio Palandri Antonelli, Cosmin ...
SIGMOD
2008
ACM
164views Database» more  SIGMOD 2008»
14 years 7 months ago
Relational-style XML query
We study the problem of querying relational data embedded in XML. Relational data can be represented by various tree structures in XML. However, current XML query methods, such as...
Taro L. Saito, Shinichi Morishita